publications
Peer Reviewed Journals
2010
1. Chinnasamy Perumal Rajadurai and Gopal Ramesh Kumar (2010) Functional and comparative genomics studies on Carboxydothermus hydrogenoformans specific to CO-metabolism and hydrogen production. Online Journal of Bioinformatics.11 (1):90-105. Link
2009
2. G. Aravindhan, G. Ramesh Kumar, R. Sathish Kumar and K. Subha (2009) AJAX Interface: A Breakthrough in Bioinformatics Web Applications. Proteomics Insights 2 1-7. Link
3. G. Aravindhan, R. Sathish Kumar, K. Subha, T.K.Subazini, Alpana Dey, Krishna Kant and G. Ramesh Kumar (2009) AIM-BLAST-AJAX Interfaced Multisequence Blast. Proteomics Insights 2 9-13. Link
4. Gopal Ramesh Kumar, Thankaswamy Kosalai Subazini, Kalyanamoorthy Subha, Chinnasamy Perumal Rajadurai and Latha Prabakar (2009) CanGeneBase (CGB) - a database on cancer related genes. Bioinformation. 3(10),422-424. Pubmed
5. K Palani Kannan, TK Subazini, CP Rajadurai, S Naga Vignesh and G Ramesh Kumar (2009) Computational motif signature discovery and validation of gene prediction in Aspergillus terreus NIH 2624. International Journal of Computational Intelligence in Bioinformatics. 2(1),13-19. Link
6. Gopal Ramesh Kumar, Ganesan Aravindhan, Thankaswamy Kosalai Subazini and Radhakrishnan Sathish Kumar (2009) Bioinfotracker: A novel system for advanced genome functional insight. Journal of Biological Sequence. pp. 046-049. Link
2008
7. Kalyanamoorthy Subha and Gopal Ramesh Kumar (2008) Assessment for the identification of better HDAC inhibitor class through binding energy calculations and descriptor analysis.Bioinformation.3(5), 218-222. Pubmed
2006
8. Latha P, Kalaiselvi P, Varalakshmi P, Rameshkumar G (2006) Characterization of histone (H1B) oxalate binding protein in experimental urolithiasis and bioinformatics approach to study its oxalate interaction. Biochem Biophys Res Commun.23; 345(1): 345-54. Pubmed
Presentations
2010
1. Avinash Ramani and G. Ramesh Kumar. In-silico assessment of Antagonist Properties for TGF - b Type – II Receptor as a Therapeutic approach for the Prevention of Progressive End Stage Renal Failure. Poster presented at VIIIth Asia-Pacific Bioinformatics Conference - IISc-NCBS, Bangalore (January 18-21).
2. Avinash Ramani and G. Ramesh Kumar. Virtual Screening of Natural Compounds for the Assessment of Antagonist Properties for TGF -b Type – II Receptor Kinase as a Therapeutic approach for the Prevention of Progressive End Stage Renal Failure in children with CAKUT. Oral Presentation at International Symposium on "Gene to Vial" - Concept for Biotechnology based Health Care Molecules - VIT University - Vellore (February 7 -10).
3. Avinash Ramani and G. Ramesh Kumar. Novel Therapeutic Approaches for Prevention of ESRD in children with common forms of CAKUT based on Population genetics and Bioinformatics analysis. Review Paper and Oral Presentation at International Conference in Systemics, Cybernetics and Informatics, Hyderabad (January 27 – 30).
2009
4. K.Subha and G.Ramesh Kumar. Simulation Studies of BCR ABL mediated Chronic Myeloid Leukemia system. International Conference on Molecular Medicine.IIT,Chennai (January 18 – 20).
5. S.Naga Vignesh and G.Ramesh Kumar.Identifying novel Biomarker for lung cancer diagnosis using gene expression analysis. International Conference on Molecular Medicine.IIT,Chennai (January 18 - 20).
6. G.Ramesh Kumar and S.Naga Vignesh.Taxane Knowledge base (TAX KB).International Conference on Molecular Medicine.IIT,Chennai (January 18 - 20).
7. S.Naga Vignesh and G.Ramesh Kumar.Identifying new biomarkers for lung cancer using gene expression analysis. International Conference on Open Source for Computer Aided Drug Discovery, Chandigarh (March 22-26).
8. G.Ramesh Kumar,Aravindhan,G.,Subazini,T.K.,Rajadurai,C.P.,Palanikannan,K.,Sathish Kumar, R. CD on "Knowledge source for E. coli Bioinformatics" released at Symposium on Frontiers in Computational Biology,CDAC,Pune (July 23-24).
9. T.K. Subazini, R. Sathish Kumar, K.Palanikannan, C.P. Rajadurai, G.Ramesh Kumar, Alpana Dey and Krishna Kant.ECO-MP Database:Genome-Scale Metabolic Pathway Analysis for E.coli. Presented at Symposium on frontiers in Computational Biology,CDAC,Pune (July 23-24).
10. Aravindhan G, Satish Kumar R, Rajadurai C.P,Ramesh kumar G, Alpana Dey and Krishna Kant In silico Functional Proteomic Re-annotation of Escherichia coli K12.Presented at Symposium on Frontiers in computational Biology, CDAC,Pune (July 23-24).
2008
11. K.Subha and G Ramesh Kumar. Evaluation of potential class I inhibitors by computational approach. Bioinformatica Indica '08. International Symposium on Computational Biology & Bioinformatics, Centre for Bioinformatics, University of Kerala,Trivandrum (Jan,17-19).
12. S.Naga Vignesh and G Ramesh Kumar. Screening of Effective Taxanes with Improved Anticancer Activity.12th International Conference on “The Interface of Chemistry-Biology in Biomedical Research” held at BITS, Pilani, Rajasthan,(February 22-24).
13. T.K. Subazini, Rajadurai C.P and G. Ramesh kumar. MCGT & FGT – A Microbial Comparative Genomics Tool to determine novel targets in drug discovery. Oral presentation at National conference on new frontiers and Current trends in Biotechnology,Madras University,Chennai (Oct,18 – 19).
14. K.Subha and G.Ramesh Kumar. Simulation studies to identify better therapeutic strategy in Chronic Myeloid Leukemia (CML) system. National conference on new frontiers and Current trends in Biotechnology , Madras University,Chennai (Oct,18 – 19).
15. K.Subha and G.Ramesh Kumar. Computational Modeling of Oncogenic pathways of Glioma. International Conference on New Developments in Drug Discovery from Natural Products and Traditional Medicines, NIPER,SAS Nagar (Nov, 16-20).
16. Rajadurai C.P, T.K. Subazini and G. Ramesh kumar.Mathematical Modeling and simulation of formate dehydrogenation pathway in Escherichia coli to augment biohydrogen production. National Conference on Biotechnological Approaches to Alternate Energy, IIT,Chennai (Dec 5-6).
17. S.Naga Vignesh and G.Ramesh Kumar. Screening of Effective Natural Taxane from Taxane Knowledge Base. 77th Annual Meeting of Society of Biological Chemists,IIT,Chennai (Dec 18-20).
18. Palani Kannan. K, Subazini.T.K, Ramesh Kumar. G. Comparative HMM gene prediction method on Aspergillus terreus genome for New Gene Discovery. 77th Annual Meeting of Society of Biological Chemists, IIT,Chennai (Dec 18-20).
2007
19. T.K. Subazini and G.Ramesh Kumar. Functional genomics approach for augmentation of lovastatin productivity at 48th Annual Conference of the Association of Microbiologists of India (AMI) IIT,Chennai (Dec,18-21).
20. K.Palani Kannan,T.K.Subazini,G.Ramesh Kumar. Functional genomics approach for augmentation of hydrogen productivity at BioConvene-2007. International conference on Bioinformatics & Drug Discovery, Hyderabad (Dec, 20-22).
2006
21. G.Ramesh Kumar. Augmentation of lovastatin production and process improvement through bioinformatics and systems biology approach. Presented Poster at International Symposium on " Drug Discovery to Manufacturing: Global Partnering & New Science Mumbai, India. (October 18-20).